GNINA


Dock and rescore ligands against a protein target with CNN-guided pose search and flexible binding-site definition.

Estimated minimum cost: $0.3420

Optional settings


Defaults work for most jobs. Adjust CNN scoring and search parameters only when you need finer control.

Examples

Protein target


Provide a PDB ID (downloaded from RCSB) or upload a PDB/CIF structure file, then define the docking search region.


Docking options


Choose how the docking search region is defined.


Center:
Size:

Adjust the box in the viewer or enter coordinates manually.

Ligand files


Upload one or more 3D ligand structure files. Supported types: SDF, MOL, MOL2, PDB, PDBQT.